Tools and Services developed in the group

Bioclipse

A free and open source workbench for the life sciences

EasyMapReduce

Run and scale your serial tools in MapReduce fashion, powered by Docker and Spark

FlowBase

A Flow-based programming inspired micro-framework for writing data processing pipelines in Go

KubeNow

Rapidly deploy, scale, and tear down your Kubernetes clusters on any cloud.

MetaPrint2D

A tool that predicts xenobiotic metabolism through data-mining and statistical analysis of known metabolic transformations reported in scientific literature

RDFIO

RDF import and PHP SPARQL endpoint for Semantic MediaWiki

SciLuigi

A light-weight wrapper around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular

SciPipe

A library for writing scientific Workflows in vanilla Go(lang), based on flow-based programming principles

Spark CP

A Spark-based distributed implementation of conformal prediction

SparkNow

Deploy Spark on OpenStack. Now!

Xenobiotics Metabolism Database (XMetDB)

An open access database for drugs and other xenobiotics and their respective metabolites