Welcome to the Pharmaceutical Bioinformatics research group at Uppsala University

Principal Investigator: Ola Spjuth

Research focus: Data-intensive and translational bioinformatics

The Pharmaceutical Bioinformatics research group focuses on mathematical and statistical modeling, informatics and quantitative analysis of pharmacological systems. We develop methods, algorithms and software to study and model pharmaceutical interactions, and a key focus in the group is how predictive modeling, large-scale calculations and modern e-infrastructure (such as high-performance and cloud computing) can aid the drug discovery process; e.g. when studying drug toxicity, metabolism and resistance. We are involved in several national and international consortia and have a tight connection to the pharmaceutical industry, Uppsala University Hospital, and Science for Life Laboratory. See the Projects page for more information on our ongoing research projects.

Latests Blog Posts

New GopherData post on Go-based workflow tools

10 Nov, 2017. Samuel and Jon from the group contributed to a post on the GopherData website together with Daniel Whitenack from the Pachyderm team, providing a brief overview of the growing ecosystem of workflow tools in bio- and cheminformatics implemen ...

Ola Spjuth presenting PhenoMeNal at Nordic Tryggve2 Kickoff

7 Nov, 2017. Ola Spjuth presented at the Nordic Tryggve2 Kickoff, 7 November 2017 in Märsta, Sweden. Tryggve 2 is a project within The Nordic e-Infrastructure Collaboration (NeIC), consisting of the Nordic countries Sweden, Finland, Norway and Denmark a ...

Pharmb.io group joining Glenna2 project with experiences and use cases from PhenoMeNal

6 Nov, 2017. Our research group will contribute to the Glenna2 project, an activity within the Nordic e-Infrastructure Collaboration (NeIC). We will contribute with experiences and use cases from the PhenoMeNal-H2020 project, and the focus is on making ...

HASTE project workshop at AstraZeneca, Mölndal

24 Oct, 2017. The HASTE project partners visited the AstraZeneca site in Mölndal for a 2-days workshop. There were discussions on project progress, recruitment, plans ahead, and a visit to see the many different (high content) microscopes at AstraZeneca. ...

Ola Spjuth presenting on de.NBI Symposium 2017 at Bielefeld University

23 Oct, 2017. Ola Spjuth presented at the de.NBI Symposium 2017 “The Future Development of Bioinformatics in Germany and Europe”. The symposium was held at the Center for Interdisciplinary Research (ZiF) of Bielefeld University from October 23-25, 2017. ...

Presentation at DevFest Siberia 2017

4 Oct, 2017. Jon Ander Novella presented at DevFest Siberia 2017, on the topic of “Scalable and reproducible bioinformatics workflows with Pachyderm”. Further details about the talk can be found at our previous blog post or at the conferenc ...

Presentation at the 2017 Imperial College Computing Student Workshop

3 Oct, 2017. Marco Capuccini presented KubeNow at the 2017 Imperial College Computing Student Workshop (ICCWS2017). KubeNow is a cloud agnostic platform for microservices, based on Docker and Kubernetes. Slides are availabe here. ...

More blog posts ...